Function reference • oncomsm

Package documentation

oncomsm-package oncomsm: The oncomsm package

Stable-Response-Progression model

define_srp_prior() create_srpmodel(): A stable-response-progression model

print(<srpmodel>) format(<srpmodel>): Print an srpmodel

Sampling functions

sample_posterior() sample_prior(): Sample parameters from a model

impute() sample_predictive(): Sample visits from predictive distribution

Plotting functions

plot_transition_times(): Plot the transition times of a model

plot_pfs(): Plot progression-free-survival function

plot_response_probability(): Plot the response probability distributions

plot_mstate(): Swimmer plot of multi-state data

plot(<srpmodel>): Summary plot of model prior

Other functions

visits_to_mstate(): Convert cross-sectional visit data to multi-state format

parameter_sample_to_tibble(): Convert parameter sample to data table

compute_pfs(): Compute progression-free-survival rate given sample

simulate_decision_rule(): Simulate results under a custom decision rule

check_data(): Check a visits data set for correct format