Skip to contents

Categorical heatmap component of WFPHM

wfphm_hmcat.Rd

Presents a heatmap plot for categorical variables

Usage

wfphm_hmcat_UI(id)

wfphm_hmcat_server(
  id,
  dataset,
  subjid_var,
  sorted_x,
  cat_palette = list(),
  margin
)

Arguments

id

Shiny ID [character(1)]

dataset

[shiny::reactive(data.frame) | shinymeta::metaReactive(data.frame)]

It expects the following format:

  • it contains, at least, the columns specified in the parameters: subjid_var

  • subjid_var columns is a factor

subjid_var

[character(1)]

column used as indicated in the details section

sorted_x

[factor(*) | shiny::reactive(factor(*)) | shinymeta::metaReactive(factor(*))]

indicates how the levels of subjid_var should be ordered in the X axis.

cat_palette

[list(functions)]

list of functions that receive the values of the variable and returns a vector with the colors for each of the values Each palette is applied when the name of the entry in the list matches the name of the selected categorical variable

margin

[numeric(4) | shiny::reactive(numeric(4)) | shinymeta::metaReactive(numeric(4))]

margin to be used on each of the sides. It must contain four entries named top, bottom, left and right

Value

UI

A heatmap plot

Server

A list with one entry:

  • margin: similar to the margin parameter with the minimum margins for the current plot

Functions

  • wfphm_hmcat_UI(): UI

  • wfphm_hmcat_server(): Server

Data subsetting:

  • Allows selecting several columns from all factor or character columns, from now on category_selection.

    • Menu labelled: Discrete heatmap

  • Subsets the dataset to the columns category_selection, and subj_var.

  • Pivot the dataset to a longer format such that each row have:

    • column x: the value of subjid_var

    • column y: the value of a category_selection

    • column z: the value of the category_selection in y for the value in x

  • If more than one row have the same x and y an informative error indicating the plot cannot be created is shown.

X axis ordering

  • x levels are ordered according to sorted_x

Then a call to heatmap_D3 is done with the following arguments:

  • data = subset dataset (as described above)

  • x_axis = NULL

  • y_axis = W

  • z_axis = E

  • margin is the parameter passed to this same function

  • palette is hardcoded with 8 colors. After 8 categories colors are repeated

  • msg_func = NULL

  • quiet = TRUE