Build Info
zz_buildinfo.Rmd
Build date: 2025-04-10 09:50:11
sessionInfo()
#> R version 4.4.1 (2024-06-14)
#> Platform: x86_64-pc-linux-gnu
#> Running under: Ubuntu 22.04.5 LTS
#>
#> Matrix products: default
#> BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
#> LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so; LAPACK version 3.10.0
#>
#> locale:
#> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
#> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
#> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
#> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
#> [9] LC_ADDRESS=C LC_TELEPHONE=C
#> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
#>
#> time zone: Etc/UTC
#> tzcode source: system (glibc)
#>
#> attached base packages:
#> [1] stats graphics grDevices utils datasets methods base
#>
#> loaded via a namespace (and not attached):
#> [1] digest_0.6.37 desc_1.4.3 R6_2.5.1 fastmap_1.2.0
#> [5] xfun_0.48 cachem_1.1.0 knitr_1.48 htmltools_0.5.8.1
#> [9] rmarkdown_2.28 lifecycle_1.0.4 cli_3.6.3 sass_0.4.9
#> [13] pkgdown_2.1.1 textshaping_0.4.0 jquerylib_0.1.4 systemfonts_1.1.0
#> [17] compiler_4.4.1 tools_4.4.1 ragg_1.3.3 evaluate_1.0.1
#> [21] bslib_0.8.0 yaml_2.3.10 jsonlite_1.8.9 rlang_1.1.4
#> [25] fs_1.6.4 htmlwidgets_1.6.4
knitr::kable(as.data.frame(installed.packages(), row.names = FALSE)[c("Package", "Version")])
Package | Version |
---|---|
dv.explorer.parameter | 0.1.6 |
abind | 1.4-8 |
askpass | 1.2.1 |
assertthat | 0.2.1 |
attachment | 0.4.2 |
attempt | 0.3.1 |
AzureAuth | 1.3.3 |
AzureGraph | 1.3.4 |
AzureRMR | 2.4.4 |
backports | 1.5.0 |
base64enc | 0.1-3 |
bigD | 0.2.0 |
Biobase | 2.66.0 |
BiocBaseUtils | 1.8.0 |
BiocGenerics | 0.52.0 |
BiocManager | 1.30.25 |
bit | 4.5.0 |
bit64 | 4.5.2 |
bitops | 1.0-9 |
bookdown | 0.41 |
brew | 1.0-10 |
brio | 1.1.5 |
broom | 1.0.7 |
bslib | 0.8.0 |
cachem | 1.1.0 |
callr | 3.7.6 |
car | 3.1-3 |
carData | 3.0-5 |
cellranger | 1.1.0 |
checkmate | 2.3.2 |
chromote | 0.3.1 |
cleanrmd | 0.1.1 |
cli | 3.6.3 |
clipr | 0.8.0 |
colorspace | 2.1-1 |
colourpicker | 1.3.0 |
commonmark | 1.9.2 |
config | 0.3.2 |
confintr | 1.0.2 |
covr | 3.6.4 |
cowplot | 1.1.3 |
cranlogs | 2.1.1 |
crayon | 1.5.3 |
credentials | 2.0.2 |
crosstalk | 1.2.1 |
curl | 5.2.3 |
cyclocomp | 1.1.1 |
data.table | 1.16.2 |
debugme | 1.2.0 |
DelayedArray | 0.32.0 |
Deriv | 4.1.6 |
desc | 1.4.3 |
deSolve | 1.40 |
devtools | 2.4.5 |
diffdf | 1.1.1 |
diffobj | 0.3.5 |
diffviewer | 0.1.2 |
digest | 0.6.37 |
doBy | 4.6.24 |
dockerfiler | 0.2.4 |
docopt | 0.7.1 |
downlit | 0.4.4 |
dplyr | 1.1.4 |
DT | 0.33 |
dv.filter | 3.0.2 |
dv.manager | 2.1.10 |
dygraphs | 1.1.1.6 |
ellipsis | 0.3.2 |
emmeans | 1.10.5 |
estimability | 1.5.1 |
evaluate | 1.0.1 |
fansi | 1.0.6 |
farver | 2.1.2 |
fastmap | 1.2.0 |
flextable | 0.9.7 |
foghorn | 1.6.0 |
fontawesome | 0.5.2 |
fontBitstreamVera | 0.1.1 |
fontLiberation | 0.1.0 |
fontquiver | 0.2.1 |
forcats | 1.0.0 |
foreach | 1.5.2 |
formatters | 0.5.9 |
Formula | 1.2-5 |
formula.tools | 1.7.1 |
fs | 1.6.4 |
future | 1.34.0 |
gargle | 1.5.2 |
gdtools | 0.4.0 |
geeasy | 0.1.2 |
geeM | 0.10.1 |
geepack | 1.3.12 |
generics | 0.1.3 |
GenomeInfoDb | 1.42.3 |
GenomeInfoDbData | 1.2.13 |
GenomicRanges | 1.58.0 |
gert | 2.1.4 |
GGally | 2.2.1 |
ggExtra | 0.10.1 |
ggformula | 0.12.0 |
ggmosaic | 0.3.3 |
ggplot2 | 3.5.1 |
ggpmisc | 0.6.0 |
ggpp | 0.5.8-1 |
ggrepel | 0.9.6 |
ggridges | 0.5.6 |
ggstats | 0.7.0 |
gh | 1.4.1 |
gitcreds | 0.1.2 |
glmnet | 4.1-8 |
globals | 0.16.3 |
glue | 1.8.0 |
gmailr | 2.0.0 |
goftest | 1.2-3 |
golem | 0.5.1 |
gridExtra | 2.3 |
gt | 0.11.1 |
gtable | 0.3.6 |
haven | 2.5.4 |
here | 1.0.1 |
highr | 0.11 |
Hmisc | 5.2-0 |
hms | 1.1.3 |
htmlTable | 2.4.3 |
htmltools | 0.5.8.1 |
htmlwidgets | 1.6.4 |
httpuv | 1.6.15 |
httr | 1.4.7 |
httr2 | 1.0.5 |
hunspell | 3.0.5 |
ini | 0.3.1 |
IRanges | 2.40.1 |
isoband | 0.2.7 |
iterators | 1.0.14 |
jose | 1.2.1 |
jquerylib | 0.1.4 |
jsonlite | 1.8.9 |
jsonvalidate | 1.3.2 |
juicyjuice | 0.1.0 |
katex | 1.5.0 |
kinship2 | 1.9.6.1 |
knitr | 1.48 |
labeling | 0.4.3 |
labelled | 2.13.0 |
later | 1.3.2 |
lazyeval | 0.2.2 |
lifecycle | 1.0.4 |
lintr | 3.1.2 |
listenv | 0.9.1 |
littler | 0.3.20 |
lme4 | 1.1-35.5 |
lmodel2 | 1.7-3 |
logger | 0.4.0 |
lubridate | 1.9.3 |
magick | 2.8.5 |
magrittr | 2.0.3 |
markdown | 1.13 |
MatrixGenerics | 1.18.1 |
MatrixModels | 0.5-3 |
matrixStats | 1.4.1 |
memoise | 2.0.1 |
MESS | 0.5.12 |
metacore | 0.1.3 |
metatools | 0.1.6 |
microbenchmark | 1.5.0 |
mime | 0.12 |
miniUI | 0.1.1.1 |
minqa | 1.2.8 |
mmrm | 0.3.14 |
mockery | 0.4.4 |
modelr | 0.1.11 |
mosaicCore | 0.9.4.0 |
multcomp | 1.4-26 |
multcompView | 0.1-10 |
MultiAssayExperiment | 1.32.0 |
munsell | 0.5.1 |
mvtnorm | 1.3-1 |
nestcolor | 0.1.2 |
nloptr | 2.1.1 |
numDeriv | 2016.8-1.1 |
officer | 0.6.7 |
openssl | 2.2.2 |
openxlsx | 4.2.7.1 |
operator.tools | 1.6.3 |
packrat | 0.9.2 |
pak | 0.8.0 |
parallelly | 1.38.0 |
parsedate | 1.3.1 |
patchwork | 1.3.0 |
patrick | 0.2.0 |
pbkrtest | 0.5.3 |
pharmaverseadam | 1.1.0 |
pillar | 1.9.0 |
pingr | 2.0.4 |
pkgbuild | 1.4.5 |
pkgconfig | 2.0.3 |
pkgdown | 2.1.1 |
pkgload | 1.4.0 |
PKI | 0.1-14 |
plotly | 4.10.4 |
plyr | 1.8.9 |
png | 0.1-8 |
polynom | 1.4-1 |
praise | 1.0.0 |
precrec | 0.14.4 |
prettyunits | 1.2.0 |
pROC | 1.18.5 |
processx | 3.8.4 |
productplots | 0.1.1 |
profvis | 0.4.0 |
progress | 1.2.3 |
promises | 1.3.0 |
ps | 1.8.1 |
purrr | 1.0.2 |
quadprog | 1.5-8 |
quantreg | 5.99 |
quarto | 1.4.4 |
R.cache | 0.16.0 |
R.methodsS3 | 1.8.2 |
R.oo | 1.26.0 |
R.utils | 2.12.3 |
r2d3 | 0.2.6 |
R6 | 2.5.1 |
ragg | 1.3.3 |
rappdirs | 0.3.3 |
rbibutils | 2.3 |
rcmdcheck | 1.4.0 |
RColorBrewer | 1.1-3 |
Rcpp | 1.0.13 |
Rdpack | 2.6.1 |
reactable | 0.4.4 |
reactR | 0.6.1 |
readr | 2.1.5 |
readxl | 1.4.3 |
rematch | 2.0.0 |
rematch2 | 2.1.2 |
remotes | 2.5.0 |
renv | 1.0.11 |
rex | 1.2.1 |
rhub | 2.0.0 |
rlang | 1.1.4 |
rlistings | 0.2.9 |
rmarkdown | 2.28 |
roxygen2 | 7.3.2 |
rprojroot | 2.0.4 |
rsconnect | 1.3.2 |
rstudioapi | 0.17.1 |
rsvg | 2.6.1 |
rtables | 0.6.10 |
rticles | 0.27 |
rversions | 2.1.2 |
rvest | 1.0.4 |
S4Arrays | 1.6.0 |
S4Vectors | 0.44.0 |
safetyData | 1.0.0 |
sandwich | 3.1-1 |
sass | 0.4.9 |
scales | 1.3.0 |
selectr | 0.4-2 |
sessioninfo | 1.2.2 |
shape | 1.4.6.1 |
shiny | 1.9.1 |
shinyAce | 0.4.3 |
shinybusy | 0.3.3 |
shinycssloaders | 1.1.0 |
shinydisconnect | 0.1.1 |
shinyFeedback | 0.4.0 |
shinyjs | 2.1.0 |
shinymeta | 0.2.0.3 |
shinytest | 1.6.1 |
shinytest2 | 0.3.2 |
shinyTree | 0.3.1 |
shinyvalidate | 0.1.3 |
shinyWidgets | 0.8.7 |
showimage | 1.0.0 |
sourcetools | 0.1.7-1 |
sparkline | 2.0 |
SparseArray | 1.6.2 |
SparseM | 1.84-2 |
spelling | 2.3.1 |
splus2R | 1.3-5 |
stringi | 1.8.4 |
stringr | 1.5.1 |
styler | 1.10.3 |
SummarizedExperiment | 1.36.0 |
svglite | 2.1.3 |
sys | 3.4.3 |
systemfonts | 1.1.0 |
teal | 0.15.2 |
teal.code | 0.5.0 |
teal.data | 0.6.0 |
teal.logger | 0.3.0 |
teal.modules.clinical | 0.9.1 |
teal.modules.general | 0.3.0 |
teal.reporter | 0.3.1 |
teal.slice | 0.5.1 |
teal.transform | 0.5.0 |
teal.widgets | 0.4.2 |
tern | 0.9.6 |
tern.gee | 0.1.5 |
tern.mmrm | 0.3.2 |
testit | 0.13 |
testthat | 3.2.1.1 |
textshaping | 0.4.0 |
TH.data | 1.1-2 |
tibble | 3.2.1 |
tidyr | 1.3.1 |
tidyselect | 1.2.1 |
timechange | 0.3.0 |
tinytex | 0.53 |
TMB | 1.9.15 |
tufte | 0.13 |
tzdb | 0.4.0 |
UCSC.utils | 1.2.0 |
urlchecker | 1.0.1 |
usethis | 3.0.0 |
utf8 | 1.2.4 |
uuid | 1.2-1 |
V8 | 6.0.0 |
vctrs | 0.6.5 |
vdiffr | 1.0.7 |
vegawidget | 0.5.0 |
viridis | 0.6.5 |
viridisLite | 0.4.2 |
vistime | 1.2.4 |
vroom | 1.6.5 |
waldo | 0.5.3 |
webdriver | 1.0.6 |
webfakes | 1.3.1 |
websocket | 1.4.2 |
whisker | 0.4.1 |
whoami | 1.3.0 |
withr | 3.0.2 |
xfun | 0.48 |
xml2 | 1.3.6 |
xmlparsedata | 1.0.5 |
xopen | 1.0.1 |
xtable | 1.8-4 |
xts | 0.14.1 |
XVector | 0.46.0 |
yaml | 2.3.10 |
zip | 2.3.1 |
zlibbioc | 1.52.0 |
zoo | 1.8-12 |
base | 4.4.1 |
boot | 1.3-30 |
class | 7.3-22 |
cluster | 2.1.6 |
codetools | 0.2-20 |
compiler | 4.4.1 |
datasets | 4.4.1 |
foreign | 0.8-86 |
graphics | 4.4.1 |
grDevices | 4.4.1 |
grid | 4.4.1 |
KernSmooth | 2.23-24 |
lattice | 0.22-6 |
MASS | 7.3-60.2 |
Matrix | 1.7-0 |
methods | 4.4.1 |
mgcv | 1.9-1 |
nlme | 3.1-164 |
nnet | 7.3-19 |
parallel | 4.4.1 |
rpart | 4.1.23 |
spatial | 7.3-17 |
splines | 4.4.1 |
stats | 4.4.1 |
stats4 | 4.4.1 |
survival | 3.6-4 |
tcltk | 4.4.1 |
tools | 4.4.1 |
utils | 4.4.1 |