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Build date: 2025-04-10 09:50:11

sessionInfo()
#> R version 4.4.1 (2024-06-14)
#> Platform: x86_64-pc-linux-gnu
#> Running under: Ubuntu 22.04.5 LTS
#> 
#> Matrix products: default
#> BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
#> LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so;  LAPACK version 3.10.0
#> 
#> locale:
#>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
#>  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
#>  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
#>  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
#>  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
#> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
#> 
#> time zone: Etc/UTC
#> tzcode source: system (glibc)
#> 
#> attached base packages:
#> [1] stats     graphics  grDevices utils     datasets  methods   base     
#> 
#> loaded via a namespace (and not attached):
#>  [1] digest_0.6.37     desc_1.4.3        R6_2.5.1          fastmap_1.2.0    
#>  [5] xfun_0.48         cachem_1.1.0      knitr_1.48        htmltools_0.5.8.1
#>  [9] rmarkdown_2.28    lifecycle_1.0.4   cli_3.6.3         sass_0.4.9       
#> [13] pkgdown_2.1.1     textshaping_0.4.0 jquerylib_0.1.4   systemfonts_1.1.0
#> [17] compiler_4.4.1    tools_4.4.1       ragg_1.3.3        evaluate_1.0.1   
#> [21] bslib_0.8.0       yaml_2.3.10       jsonlite_1.8.9    rlang_1.1.4      
#> [25] fs_1.6.4          htmlwidgets_1.6.4
knitr::kable(as.data.frame(installed.packages(), row.names = FALSE)[c("Package", "Version")])
Package Version
dv.explorer.parameter 0.1.6
abind 1.4-8
askpass 1.2.1
assertthat 0.2.1
attachment 0.4.2
attempt 0.3.1
AzureAuth 1.3.3
AzureGraph 1.3.4
AzureRMR 2.4.4
backports 1.5.0
base64enc 0.1-3
bigD 0.2.0
Biobase 2.66.0
BiocBaseUtils 1.8.0
BiocGenerics 0.52.0
BiocManager 1.30.25
bit 4.5.0
bit64 4.5.2
bitops 1.0-9
bookdown 0.41
brew 1.0-10
brio 1.1.5
broom 1.0.7
bslib 0.8.0
cachem 1.1.0
callr 3.7.6
car 3.1-3
carData 3.0-5
cellranger 1.1.0
checkmate 2.3.2
chromote 0.3.1
cleanrmd 0.1.1
cli 3.6.3
clipr 0.8.0
colorspace 2.1-1
colourpicker 1.3.0
commonmark 1.9.2
config 0.3.2
confintr 1.0.2
covr 3.6.4
cowplot 1.1.3
cranlogs 2.1.1
crayon 1.5.3
credentials 2.0.2
crosstalk 1.2.1
curl 5.2.3
cyclocomp 1.1.1
data.table 1.16.2
debugme 1.2.0
DelayedArray 0.32.0
Deriv 4.1.6
desc 1.4.3
deSolve 1.40
devtools 2.4.5
diffdf 1.1.1
diffobj 0.3.5
diffviewer 0.1.2
digest 0.6.37
doBy 4.6.24
dockerfiler 0.2.4
docopt 0.7.1
downlit 0.4.4
dplyr 1.1.4
DT 0.33
dv.filter 3.0.2
dv.manager 2.1.10
dygraphs 1.1.1.6
ellipsis 0.3.2
emmeans 1.10.5
estimability 1.5.1
evaluate 1.0.1
fansi 1.0.6
farver 2.1.2
fastmap 1.2.0
flextable 0.9.7
foghorn 1.6.0
fontawesome 0.5.2
fontBitstreamVera 0.1.1
fontLiberation 0.1.0
fontquiver 0.2.1
forcats 1.0.0
foreach 1.5.2
formatters 0.5.9
Formula 1.2-5
formula.tools 1.7.1
fs 1.6.4
future 1.34.0
gargle 1.5.2
gdtools 0.4.0
geeasy 0.1.2
geeM 0.10.1
geepack 1.3.12
generics 0.1.3
GenomeInfoDb 1.42.3
GenomeInfoDbData 1.2.13
GenomicRanges 1.58.0
gert 2.1.4
GGally 2.2.1
ggExtra 0.10.1
ggformula 0.12.0
ggmosaic 0.3.3
ggplot2 3.5.1
ggpmisc 0.6.0
ggpp 0.5.8-1
ggrepel 0.9.6
ggridges 0.5.6
ggstats 0.7.0
gh 1.4.1
gitcreds 0.1.2
glmnet 4.1-8
globals 0.16.3
glue 1.8.0
gmailr 2.0.0
goftest 1.2-3
golem 0.5.1
gridExtra 2.3
gt 0.11.1
gtable 0.3.6
haven 2.5.4
here 1.0.1
highr 0.11
Hmisc 5.2-0
hms 1.1.3
htmlTable 2.4.3
htmltools 0.5.8.1
htmlwidgets 1.6.4
httpuv 1.6.15
httr 1.4.7
httr2 1.0.5
hunspell 3.0.5
ini 0.3.1
IRanges 2.40.1
isoband 0.2.7
iterators 1.0.14
jose 1.2.1
jquerylib 0.1.4
jsonlite 1.8.9
jsonvalidate 1.3.2
juicyjuice 0.1.0
katex 1.5.0
kinship2 1.9.6.1
knitr 1.48
labeling 0.4.3
labelled 2.13.0
later 1.3.2
lazyeval 0.2.2
lifecycle 1.0.4
lintr 3.1.2
listenv 0.9.1
littler 0.3.20
lme4 1.1-35.5
lmodel2 1.7-3
logger 0.4.0
lubridate 1.9.3
magick 2.8.5
magrittr 2.0.3
markdown 1.13
MatrixGenerics 1.18.1
MatrixModels 0.5-3
matrixStats 1.4.1
memoise 2.0.1
MESS 0.5.12
metacore 0.1.3
metatools 0.1.6
microbenchmark 1.5.0
mime 0.12
miniUI 0.1.1.1
minqa 1.2.8
mmrm 0.3.14
mockery 0.4.4
modelr 0.1.11
mosaicCore 0.9.4.0
multcomp 1.4-26
multcompView 0.1-10
MultiAssayExperiment 1.32.0
munsell 0.5.1
mvtnorm 1.3-1
nestcolor 0.1.2
nloptr 2.1.1
numDeriv 2016.8-1.1
officer 0.6.7
openssl 2.2.2
openxlsx 4.2.7.1
operator.tools 1.6.3
packrat 0.9.2
pak 0.8.0
parallelly 1.38.0
parsedate 1.3.1
patchwork 1.3.0
patrick 0.2.0
pbkrtest 0.5.3
pharmaverseadam 1.1.0
pillar 1.9.0
pingr 2.0.4
pkgbuild 1.4.5
pkgconfig 2.0.3
pkgdown 2.1.1
pkgload 1.4.0
PKI 0.1-14
plotly 4.10.4
plyr 1.8.9
png 0.1-8
polynom 1.4-1
praise 1.0.0
precrec 0.14.4
prettyunits 1.2.0
pROC 1.18.5
processx 3.8.4
productplots 0.1.1
profvis 0.4.0
progress 1.2.3
promises 1.3.0
ps 1.8.1
purrr 1.0.2
quadprog 1.5-8
quantreg 5.99
quarto 1.4.4
R.cache 0.16.0
R.methodsS3 1.8.2
R.oo 1.26.0
R.utils 2.12.3
r2d3 0.2.6
R6 2.5.1
ragg 1.3.3
rappdirs 0.3.3
rbibutils 2.3
rcmdcheck 1.4.0
RColorBrewer 1.1-3
Rcpp 1.0.13
Rdpack 2.6.1
reactable 0.4.4
reactR 0.6.1
readr 2.1.5
readxl 1.4.3
rematch 2.0.0
rematch2 2.1.2
remotes 2.5.0
renv 1.0.11
rex 1.2.1
rhub 2.0.0
rlang 1.1.4
rlistings 0.2.9
rmarkdown 2.28
roxygen2 7.3.2
rprojroot 2.0.4
rsconnect 1.3.2
rstudioapi 0.17.1
rsvg 2.6.1
rtables 0.6.10
rticles 0.27
rversions 2.1.2
rvest 1.0.4
S4Arrays 1.6.0
S4Vectors 0.44.0
safetyData 1.0.0
sandwich 3.1-1
sass 0.4.9
scales 1.3.0
selectr 0.4-2
sessioninfo 1.2.2
shape 1.4.6.1
shiny 1.9.1
shinyAce 0.4.3
shinybusy 0.3.3
shinycssloaders 1.1.0
shinydisconnect 0.1.1
shinyFeedback 0.4.0
shinyjs 2.1.0
shinymeta 0.2.0.3
shinytest 1.6.1
shinytest2 0.3.2
shinyTree 0.3.1
shinyvalidate 0.1.3
shinyWidgets 0.8.7
showimage 1.0.0
sourcetools 0.1.7-1
sparkline 2.0
SparseArray 1.6.2
SparseM 1.84-2
spelling 2.3.1
splus2R 1.3-5
stringi 1.8.4
stringr 1.5.1
styler 1.10.3
SummarizedExperiment 1.36.0
svglite 2.1.3
sys 3.4.3
systemfonts 1.1.0
teal 0.15.2
teal.code 0.5.0
teal.data 0.6.0
teal.logger 0.3.0
teal.modules.clinical 0.9.1
teal.modules.general 0.3.0
teal.reporter 0.3.1
teal.slice 0.5.1
teal.transform 0.5.0
teal.widgets 0.4.2
tern 0.9.6
tern.gee 0.1.5
tern.mmrm 0.3.2
testit 0.13
testthat 3.2.1.1
textshaping 0.4.0
TH.data 1.1-2
tibble 3.2.1
tidyr 1.3.1
tidyselect 1.2.1
timechange 0.3.0
tinytex 0.53
TMB 1.9.15
tufte 0.13
tzdb 0.4.0
UCSC.utils 1.2.0
urlchecker 1.0.1
usethis 3.0.0
utf8 1.2.4
uuid 1.2-1
V8 6.0.0
vctrs 0.6.5
vdiffr 1.0.7
vegawidget 0.5.0
viridis 0.6.5
viridisLite 0.4.2
vistime 1.2.4
vroom 1.6.5
waldo 0.5.3
webdriver 1.0.6
webfakes 1.3.1
websocket 1.4.2
whisker 0.4.1
whoami 1.3.0
withr 3.0.2
xfun 0.48
xml2 1.3.6
xmlparsedata 1.0.5
xopen 1.0.1
xtable 1.8-4
xts 0.14.1
XVector 0.46.0
yaml 2.3.10
zip 2.3.1
zlibbioc 1.52.0
zoo 1.8-12
base 4.4.1
boot 1.3-30
class 7.3-22
cluster 2.1.6
codetools 0.2-20
compiler 4.4.1
datasets 4.4.1
foreign 0.8-86
graphics 4.4.1
grDevices 4.4.1
grid 4.4.1
KernSmooth 2.23-24
lattice 0.22-6
MASS 7.3-60.2
Matrix 1.7-0
methods 4.4.1
mgcv 1.9-1
nlme 3.1-164
nnet 7.3-19
parallel 4.4.1
rpart 4.1.23
spatial 7.3-17
splines 4.4.1
stats 4.4.1
stats4 4.4.1
survival 3.6-4
tcltk 4.4.1
tools 4.4.1
utils 4.4.1