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Build date: 2025-11-26 15:40:28

sessionInfo()
#> R version 4.4.3 (2025-02-28)
#> Platform: x86_64-pc-linux-gnu
#> Running under: Ubuntu 22.04.5 LTS
#> 
#> Matrix products: default
#> BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
#> LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so;  LAPACK version 3.10.0
#> 
#> locale:
#>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
#>  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
#>  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
#>  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
#>  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
#> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
#> 
#> time zone: Etc/UTC
#> tzcode source: system (glibc)
#> 
#> attached base packages:
#> [1] stats     graphics  grDevices utils     datasets  methods   base     
#> 
#> loaded via a namespace (and not attached):
#>  [1] digest_0.6.37     desc_1.4.3        R6_2.6.1          fastmap_1.2.0    
#>  [5] xfun_0.52         cachem_1.1.0      knitr_1.50        htmltools_0.5.8.1
#>  [9] rmarkdown_2.29    lifecycle_1.0.4   cli_3.6.5         sass_0.4.10      
#> [13] pkgdown_2.1.2     textshaping_1.0.1 jquerylib_0.1.4   systemfonts_1.2.3
#> [17] compiler_4.4.3    tools_4.4.3       ragg_1.4.0        evaluate_1.0.3   
#> [21] bslib_0.9.0       yaml_2.3.10       jsonlite_2.0.0    rlang_1.1.6      
#> [25] fs_1.6.6          htmlwidgets_1.6.4
knitr::kable(as.data.frame(installed.packages(), row.names = FALSE)[c("Package", "Version")])
Package Version
dv.explorer.parameter 0.1.9-9001
abind 1.4-8
askpass 1.2.1
assertthat 0.2.1
attachment 0.4.5
attempt 0.3.1
AzureAuth 1.3.3
AzureGraph 1.3.4
AzureRMR 2.4.4
backports 1.5.0
base64enc 0.1-3
bigD 0.3.1
Biobase 2.66.0
BiocBaseUtils 1.8.0
BiocGenerics 0.52.0
BiocManager 1.30.25
bit 4.6.0
bit64 4.6.0-1
bitops 1.0-9
bookdown 0.43
brew 1.0-10
brio 1.1.5
broom 1.0.8
bslib 0.9.0
cachem 1.1.0
callr 3.7.6
car 3.1-3
carData 3.0-5
cellranger 1.1.0
checkmate 2.3.2
chromote 0.5.1
cleanrmd 0.1.1
cli 3.6.5
clipr 0.8.0
colorspace 2.1-1
colourpicker 1.3.0
commonmark 1.9.5
config 0.3.2
confintr 1.0.2
covr 3.6.4
cowplot 1.1.3
cranlogs 2.1.1
crayon 1.5.3
credentials 2.0.2
crosstalk 1.2.1
curl 6.2.2
cyclocomp 1.1.1
data.table 1.17.2
debugme 1.2.0
DelayedArray 0.32.0
Deriv 4.1.6
desc 1.4.3
deSolve 1.40
devtools 2.4.5
diffdf 1.1.1
diffobj 0.3.6
diffviewer 0.1.2
digest 0.6.37
doBy 4.6.26
dockerfiler 0.2.5
docopt 0.7.2
downlit 0.4.4
dplyr 1.1.4
DT 0.33
dv.filter 3.0.3
dv.manager 2.2.0
dygraphs 1.1.1.6
ellipsis 0.3.2
emmeans 1.11.1
estimability 1.5.1
evaluate 1.0.3
fansi 1.0.6
farver 2.1.2
fastmap 1.2.0
flextable 0.9.7
foghorn 1.6.0
fontawesome 0.5.3
fontBitstreamVera 0.1.1
fontLiberation 0.1.0
fontquiver 0.2.1
forcats 1.0.0
foreach 1.5.2
formatters 0.5.11
Formula 1.2-5
formula.tools 1.7.1
fs 1.6.6
future 1.49.0
gargle 1.5.2
gdtools 0.4.2
geeasy 0.1.2
geeM 0.10.1
geepack 1.3.12
generics 0.1.4
GenomeInfoDb 1.42.3
GenomeInfoDbData 1.2.13
GenomicRanges 1.58.0
gert 2.1.5
GGally 2.2.1
ggExtra 0.10.1
ggformula 0.12.0
ggmosaic 0.3.3
ggplot2 3.5.2
ggpmisc 0.6.1
ggpp 0.5.8-1
ggrepel 0.9.6
ggridges 0.5.6
ggstats 0.9.0
gh 1.4.1
gitcreds 0.1.2
glmnet 4.1-8
globals 0.18.0
glue 1.8.0
gmailr 2.0.0
goftest 1.2-3
golem 0.5.1
gridExtra 2.3
gt 1.0.0
gtable 0.3.6
haven 2.5.4
here 1.0.1
highr 0.11
Hmisc 5.2-3
hms 1.1.3
htmlTable 2.4.3
htmltools 0.5.8.1
htmlwidgets 1.6.4
httpuv 1.6.16
httr 1.4.7
httr2 1.1.2
hunspell 3.0.6
ini 0.3.1
IRanges 2.40.1
isoband 0.2.7
iterators 1.0.14
jose 1.2.1
jquerylib 0.1.4
jsonlite 2.0.0
jsonvalidate 1.5.0
juicyjuice 0.1.0
katex 1.5.0
kinship2 1.9.6.1
knitr 1.50
labeling 0.4.3
labelled 2.14.1
later 1.4.2
lazyeval 0.2.2
lifecycle 1.0.4
lintr 3.2.0
listenv 0.9.1
litedown 0.7
littler 0.3.21
lme4 1.1-37
lmodel2 1.7-4
logger 0.4.0
lubridate 1.9.4
lzstring 0.1.3
magick 2.8.6
magrittr 2.0.3
markdown 2.0
MatrixGenerics 1.18.1
MatrixModels 0.5-4
matrixStats 1.5.0
memoise 2.0.1
MESS 0.5.12
metacore 0.1.3
metatools 0.1.6
microbenchmark 1.5.0
mime 0.13
miniUI 0.1.2
minqa 1.2.8
mmrm 0.3.14
mockery 0.4.4
modelr 0.1.11
mosaicCore 0.9.4.0
multcomp 1.4-28
multcompView 0.1-10
MultiAssayExperiment 1.32.0
mvtnorm 1.3-3
nestcolor 0.1.3
nloptr 2.2.1
numDeriv 2016.8-1.1
officer 0.6.8
openssl 2.3.2
openxlsx 4.2.8
operator.tools 1.6.3
packrat 0.9.2
pak 0.8.0.2
parallelly 1.44.0
parsedate 1.3.2
patchwork 1.3.0
patrick 0.3.0
pbkrtest 0.5.4
pharmaverseadam 1.1.0
pillar 1.10.2
pingr 2.0.5
pkgbuild 1.4.7
pkgconfig 2.0.3
pkgdown 2.1.2
pkgload 1.4.0
PKI 0.1-14
plotly 4.10.4
plyr 1.8.9
png 0.1-8
polynom 1.4-1
praise 1.0.0
precrec 0.14.5
prettyunits 1.2.0
pROC 1.18.5
processx 3.8.6
productplots 0.1.1
profvis 0.4.0
progress 1.2.3
promises 1.3.2
ps 1.9.1
purrr 1.0.4
quadprog 1.5-8
quantreg 6.1
quarto 1.4.4
R.cache 0.17.0
R.methodsS3 1.8.2
R.oo 1.27.1
R.utils 2.13.0
r2d3 0.2.6
R6 2.6.1
ragg 1.4.0
rappdirs 0.3.3
rbibutils 2.3
rcmdcheck 1.4.0
RColorBrewer 1.1-3
Rcpp 1.0.14
RcppTOML 0.2.3
Rdpack 2.6.4
reactable 0.4.4
reactR 0.6.1
readr 2.1.5
readxl 1.4.5
reformulas 0.4.1
rematch 2.0.0
rematch2 2.1.2
remotes 2.5.0
renv 1.1.4
rex 1.2.1
rhub 2.0.1
rlang 1.1.6
rlistings 0.2.11
rmarkdown 2.29
roxy.shinylive 1.0.0
roxygen2 7.3.2
rprojroot 2.0.4
rsconnect 1.4.0
rstudioapi 0.17.1
rsvg 2.6.2
rtables 0.6.12
rtables.officer 0.1.0
rticles 0.27
rversions 2.1.2
rvest 1.0.4
S4Arrays 1.6.0
S4Vectors 0.44.0
safetyData 1.0.0
sandwich 3.1-1
sass 0.4.10
scales 1.4.0
selectr 0.4-2
sessioninfo 1.2.3
shape 1.4.6.1
shiny 1.10.0
shinyAce 0.4.4
shinybusy 0.3.3
shinycssloaders 1.1.0
shinydisconnect 0.1.1
shinyFeedback 0.4.0
shinyjs 2.1.0
shinymeta 0.2.1
shinytest 1.6.1
shinytest2 0.4.1
shinyTree 0.3.1
shinyvalidate 0.1.3
shinyWidgets 0.9.0
showimage 1.0.0
sourcetools 0.1.7-1
sparkline 2.0
SparseArray 1.6.2
SparseM 1.84-2
spelling 2.3.1
splus2R 1.3-5
stringi 1.8.7
stringr 1.5.1
styler 1.10.3
SummarizedExperiment 1.36.0
svglite 2.2.1
sys 3.4.3
systemfonts 1.2.3
teal 0.16.0
teal.code 0.6.1
teal.data 0.7.0
teal.logger 0.3.2
teal.modules.clinical 0.10.0
teal.modules.general 0.4.1
teal.reporter 0.4.0
teal.slice 0.6.0
teal.transform 0.6.0
teal.widgets 0.4.3
tern 0.9.8
tern.gee 0.1.5
tern.mmrm 0.3.2
testit 0.13
testthat 3.2.3
textshaping 1.0.1
TH.data 1.1-3
tibble 3.2.1
tidyr 1.3.1
tidyselect 1.2.1
timechange 0.3.0
tinytex 0.57
TMB 1.9.17
tufte 0.13
tzdb 0.5.0
UCSC.utils 1.2.0
urlchecker 1.0.1
usethis 3.1.0
utf8 1.2.5
uuid 1.2-1
V8 6.0.3
vctrs 0.6.5
vdiffr 1.0.8
vegawidget 0.5.0
viridis 0.6.5
viridisLite 0.4.2
vistime 1.2.4
vroom 1.6.5
waldo 0.6.1
webdriver 1.0.6
webfakes 1.3.2
websocket 1.4.4
whisker 0.4.1
whoami 1.3.0
withr 3.0.2
xfun 0.52
xml2 1.3.8
xmlparsedata 1.0.5
xopen 1.0.1
xtable 1.8-4
xts 0.14.1
XVector 0.46.0
yaml 2.3.10
zip 2.3.3
zlibbioc 1.52.0
zoo 1.8-14
base 4.4.3
boot 1.3-31
class 7.3-23
cluster 2.1.8
codetools 0.2-20
compiler 4.4.3
datasets 4.4.3
foreign 0.8-88
graphics 4.4.3
grDevices 4.4.3
grid 4.4.3
KernSmooth 2.23-26
lattice 0.22-6
MASS 7.3-64
Matrix 1.7-2
methods 4.4.3
mgcv 1.9-1
nlme 3.1-167
nnet 7.3-20
parallel 4.4.3
rpart 4.1.24
spatial 7.3-18
splines 4.4.3
stats 4.4.3
stats4 4.4.3
survival 3.8-3
tcltk 4.4.3
tools 4.4.3
utils 4.4.3