This is the main function for plotting individual plots from uploaded datasets. It is designed to be flexible enough to handle continuous/continuous, discrete/continuous, and discrete/discrete type of data to cover most use cases.
Usage
do_data_page_ind_plot(
nmd,
rownums,
colnums,
pagenum = 1,
filter_id,
filter_cmt,
sort_by,
strat_by,
highlight_range,
x_axis,
y_axis,
color_by,
med_line,
med_line_by,
boxplot,
dolm,
smoother,
facet_name = "ID",
logy,
lby = logbreaks_y,
lbx = logbreaks_x,
logx,
plot_title,
label_size = 3,
discrete_threshold = 7,
boxplot_x_threshold = 20,
error_text_color = "#F8766D",
highlight_var,
highlight_var_values,
plot_dosing = TRUE,
same_scale = FALSE,
dose_col = "DOSE",
dose_units,
lloq_name = "",
debug = FALSE
)Arguments
- nmd
The NONMEM dataset for plotting (requires ID, TIME, DV at minimum)
- rownums
How many rows per page
- colnums
How many cols per page
- pagenum
Page number to filter by
- filter_id
Filter by these IDs
- filter_cmt
Filter by this CMT
- sort_by
Sort by one or more variables (a list)
- strat_by
Stratify by 1 variable and highlight outliers
- highlight_range
Flag potential outliers when they are higher or below this mean value of the group, a string
- x_axis
X-axis for plot
- y_axis
Y-axis for plot
- color_by
Color by this column
- med_line
When TRUE, will draw median line by equidistant X-axis bins
- med_line_by
Column name to draw median line by
- boxplot
Draws a geom_boxplot instead of geom_point and geom_line
- dolm
Insert linear regression with formula on top of plot
- smoother
Insert smoother
- facet_name
variable to facet by
- logy
Log Y-axis
- lby
Log breaks for Y-axis
- lbx
Log breaks for X-axis
- logx
Log X-axis
- plot_title
Optional plot title
- label_size
font size for geom_text labels (N=x for boxplots or linear regressions)
- discrete_threshold
Draws geom_count if there are <= this number of unique Y-values
- boxplot_x_threshold
Throws an error when the unique values of x-axis exceeds this number
- error_text_color
error text color for element text
- highlight_var
variable name to be highlighted by a different shape
- highlight_var_values
variable values associated with highlight_var to be highlighted
- plot_dosing
Plots dosing line and dose text when TRUE
- same_scale
Uses fixed scales based on entire dataset when TRUE
- dose_col
name of dose column, usually AMT or DOSE
- dose_units
(Optional) name of dose units, usually mg or nmol
- lloq_name
(Optional) Supply name of lloq column to be plotted as hline
- debug
show debugging messages