Function reference
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read_personalis() - Read a set of personalis results folders into a MultiAssayExperiment object
Reading individual modalities
Read multiple samples, but only individual modalities into a SummarizedExperiment
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read_personalis_cnv_reports() - Read Personalis CNV data for a list of samples
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read_personalis_gene_expression() - Read in gene expression data from personalis folders
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read_personalis_hla_reports() - Read Personalis HLA types for a list of samples
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read_personalis_msi_reports() - Read MSI information for a list of samples
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read_personalis_small_variant_reports() - Read in small variant data from personalis folder We only read in the "Preferred Transcript" report here:
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read_personalis_tcr_reports() - Read Personalis TCR clone report for a list of samples