Plot OncoPrint plot for specified list of variants
Usage
plot_onco_print(
variant_matrix,
column_title,
alter_list,
variant_colors,
heatmap_legend,
bottom_annotation = ComplexHeatmap::anno_empty(border = FALSE),
top_annotation = anno_empty(border = FALSE),
right_annotation = anno_empty(border = FALSE),
left_annotation = anno_empty(border = FALSE),
top = nrow(variant_matrix)
)Arguments
- variant_matrix
matrix with variants for samples/entities
- column_title
Title of OncoPrint plot
- alter_list
List with alter_graphics functions for variant types
- variant_colors
List of defined colors for variant types
- heatmap_legend
List containing legend specs (title, at, labels)
- bottom_annotation
the annotation object for the bottom, default: empty
- top_annotation
the annotation object for the top, default: empty
- right_annotation
the annotation object for the right, default: empty
- left_annotation
the annotation object for the left, default: empty
- top
Plot top x genes for given variant matrix (default: all)