Filters variant data for variant consequences. Removes any variant with a consequence matching the list of submitted consequences or an empty consequence field

Filters variant data for variant consequences. Removes any variant with a consequence matching the list of submitted consequences or an empty consequence field

Usage

filter_consequences(variant_df, consequences, type_column = "consequence_s")

Arguments

variant_df

Data frame with variant data

consequences

List of consequences to filter out

type_column

Name of column with variant types (default: consequence_s)

Value

data frame with filtered consequences